Workshop on Natural Language Processing in Biomedicine

Organizing Committee: Sophia Ananiadou, Udo Hahn, Jerry Hobbs, James Pustejovsky and Jun'ichi Tsujii

  PROCEEDINGS COVER   (  pdf  ps    )
  PREFACE   (  pdf  ps    )
  WEB PAGE   (  url  copy  )
  WORKSHOP PROGRAM   (  pdf  ps  html  )
  TABLE OF CONTENTS   (  pdf  ps  html  )
  AUTHOR INDEX   (  pdf  ps  html  )
pdfs pdf ps bib Gene Name Extraction Using FlyBase Resources pp. 1-8
Alex Morgan, Lynette Hirschman, Alexander Yeh  and  Marc Colosimo
pdfs pdf ps bib Unsupervised Monolingual and Bilingual Word-Sense Disambiguation of Medical Documents using UMLS pp. 9-16
Dominic Widdows, Stanley Peters, Scott Cederberg, Chiu-Ki Chan, Diana Steffen  and  Paul Buitelaar
pdfs pdf ps bib Using Domain-Specific Verbs for Term Classification pp. 17-24
Irena Spasic, Goran Nenadic  and  Sophia Ananiadou
pdfs pdf ps bib Enhancing Performance of Protein Name Recognizers Using Collocation pp. 25-32
Wen-Juan Hou  and  Hsin-Hsi Chen
pdfs pdf ps bib Two-Phase Biomedical NE Recognition based on SVMs pp. 33-40
Ki-Joong Lee, Young-Sook Hwang  and  Hae-Chang Rim
pdfs pdf ps bib Boosting Precision and Recall of Dictionary-Based Protein Name Recognition pp. 41-48
Yoshimasa Tsuruoka  and  Jun'ichi Tsujii
pdfs pdf ps bib Effective Adaptation of Hidden Markov Model-based Named Entity Recognizer for Biomedical Domain pp. 49-56
Dan Shen, Jie Zhang, Guodong Zhou, Jian Su  and  Chew-Lim Tan
pdfs pdf ps bib Bio-Medical Entity Extraction using Support Vector Machines pp. 57-64
Koichi Takeuchi  and  Nigel Collier
pdfs pdf ps bib Protein Name Tagging for Biomedical Annotation in Text pp. 65-72
Kaoru Yamamoto, Taku Kudo, Akihiko Konagaya  and  Yuji Matsumoto
pdfs pdf ps bib Answering Clinical Questions with Role Identification pp. 73-80
Yun Niu, Graeme Hirst, Gregory McArthur  and  Patricia Rodriguez-Gianolli
pdfs pdf ps bib Extracting Information on Pneumonia in Infants Using Natural Language Processing of Radiology Reports pp. 81-88
Eneida A. Mendonca, Janet Haas, Lyudmila Shagina, Elaine Larson  and  Carol Friedman
pdfs pdf ps bib Identification of Patients with Congestive Heart Failure using a Binary Classifier: A Case Study. pp. 89-96
Serguei V. Pakhomov, James Buntrock  and  Christopher G. Chute
pdfs pdf ps bib Encoding Biomedical Resources in TEI: The Case of the GENIA Corpus pp. 97-104
Tomaz Erjavec, Jin-Dong Kim, Tomoko Ohta, Yuka Tateisi  and  Jun'ichi Tsujii
pdfs pdf ps bib Exploring Adjectival Modification in Biomedical Discourse Across Two Genres pp. 105-112
Olivier Bodenreider  and  Serguei V. Pakhomov
pdfs pdf ps bib An Investigation of Various Information Sources for Classifying Biological names pp. 113-120
Manabu Torii, Sachin Kamboj  and  K. Vijay-Shanker
pdfs pdf ps bib Selecting Text Features for Gene Name Classification: from Documents to Terms pp. 121-128
Goran Nenadic, Simon Rice, Irena Spasic, Sophia Ananiadou  and  Benjamin Stapley